BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BA0AB021G01LP1|AL427801
(721 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1570 1266 0.0
>3x_Contig1570
Length = 12233
Score = 1266 bits (637), Expect = 0.0
Identities = 707/722 (97%), Gaps = 11/722 (1%)
Strand = Plus / Plus
Query: 1 atctttggatggtgaagatgagcatgaagaagaagagcatgaccaggaaccggag-aagg 59
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 4701 atctttggatggtgaagatgagcatgaagaagaagagcatgaccaggaaccggaggaagg 4760
Query: 60 tgaggaagagatcgttggtgtcccttgtttctggttgacagccatggagaacttaccaat 119
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4761 tgaggaagagatcgttggtgtcccttgtttctggttgacagccatggagaacttaccaat 4820
Query: 120 ggtttctcaaaacgtgacagaagctgactgtgatgtattgacatacttgacgaacatcac 179
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4821 ggtttctcaaaacgtgacagaagctgactgtgatgtattgacatacttgacgaacatcac 4880
Query: 180 tctagagtatctaactgagggtaaaccaggcttccaattgattttcaccttcgataaaga 239
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4881 tctagagtatctaactgagggtaaaccaggcttccaattgattttcaccttcgataaaga 4940
Query: 240 gaacgaattcttcactaacgaaactttaacaaagacatactactaccagtccgaattggg 299
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4941 gaacgaattcttcactaacgaaactttaacaaagacatactactaccagtccgaattggg 5000
Query: 300 ttactctggcgacttcatctatgaccatgcagagggtgaaaccattaactgggtcgataa 359
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5001 ttactctggcgacttcatctatgaccatgcagagggtgaaaccattaactgggtcgataa 5060
Query: 360 tgaccataacgttacagtcgaagtgaaaagacgaaaacaaaagaacaagactactaaaca 419
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5061 tgaccataacgttacagtcgaagtgaaaagacgaaaacaaaagaacaagactactaaaca 5120
Query: 420 aattcgtacccattgaaaagctgacacccagtggaatcgttcttccaacttctttgaccc 479
|||||||| ||||||||||||||||| ||||||||||||||||| |||||||||||||||
Sbjct: 5121 aattcgta-ccattgaaaagctgaca-ccagtggaatcgttctt-caacttctttgaccc 5177
Query: 480 cacccaaagtctcctggatccacwcgaagaagaagacgatcttgacgaagaagaaatccg 539
||||||||| |||||||| ||||||||||||||||||||||||||||||||| ||
Sbjct: 5178 --accaaagtct-ctggatcc---cgaagaagaagacgatcttgacgaagaagaaat-cg 5230
Query: 540 ctgaacttgagagtagattggctgtagattatgctatcggtgaagagatcmaggacaagt 599
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 5231 ctgaacttgagagtagattggctgtagattatgctatcggtgaagagatcaaggacaagt 5290
Query: 600 tgattccaagggcagtggattggttcaccggtgcagccctagaattagaatacggcgatg 659
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 5291 tgattccaagggcagtggattggttcaccggtgcagcactagaattagaatacggcgatg 5350
Query: 660 aacaagaagaagacgacgatgaatttgacgatcaggacsgtgaagaagaggaagaagagg 719
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 5351 aacaagaagaagacgacgatgaatttgacgatcaggacggtgaagaagaggaagaagagg 5410
Query: 720 ac 721
||
Sbjct: 5411 ac 5412
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.38 0.711 1.31
Gapped
Lambda K H
1.38 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7361
Number of Sequences: 1807
Number of extensions: 7361
Number of successful extensions: 281
Number of sequences better than 1.0e-20: 1
length of query: 721
length of database: 10,358,551
effective HSP length: 16
effective length of query: 705
effective length of database: 10,329,639
effective search space: 7282395495
effective search space used: 7282395495
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.8 bits)
S1: 12 (24.3 bits)
S2: 50 (99.9 bits)